The FT.com article required registration, so I didn't read it, but I found similar articles on the matter.
It sounds like only the 'Market' app is responsible for cleaning out old software. So, if you don't ever run that you're fine -- but I'm not sure what it would take to entirely clean that off from a phone.
I suppose if you really wanted to you could fork something like CyanogenMod and patch it to trap any phoning home that it does to a Google Market blacklist. Awful lot of work, though, to protect against malicious activity that hasn't happened yet. Probably ever won't, either.