Apache or tomcat on windows hurts my brain. Are you using Apache + mod_jk to handle SSL?
Updating java likely broke some part of Tomcat's key management. Probably overwrote some path or executable. First, check to make sure Java is pointing at the right keystore location, using keytool or conf/server.xml.
Second, try importing the keys again?
I don't think overwriting is likely.. apache and java are stored in completely seperate paths. The keystore is in a third, again, different path. The server.xml file shows the right keystore, but we get no connection.
On second thought, I think there's something to this "upgrade tomcat" idea... Im seeing scuttlebut on the internet about certain webapps breaking when java is updated, because java 7u17 requires tomcat 7 for those to work correctly.
In any case, that'll probably be my first step, since tomcat is on the list of things i need to update
As for apache on windows... RD< if you take this job, you're more than welcome to build us a super secure, light, linux box and put our web apps on it ;-)