OK, it's not a two story, it's a one story... From your description I was thinking 1 above ground and 1 below ground (two story).
When was it built approximately?
Is there other wiring that is run through the attic?
Depending on the age of the house, it could be a remodel job, or it could have been a previous owner who was conscious about stuff like this. Or it could be a purpose built situation.
But, running a single dedicated circuit for all GFCI protected sockets with the GFCI near the breaker box was a very common way of doing it when prices on GFCIs were high.
And, no matter what, from your description, the bathroom outlets aren't even remotely close to being in horizontal proximity, so that sort of destroys that theory.
Having a single GFCI in the kitchen for the sockets there is logical too. Is the first one in line, so if the GFCI trips every thing goes out.
The kitchen sockets are an independent, horizonal loop, and I THINK that code has required 20 amp socket circuits in kitchens since the 1960s. Bathrooms only, I think, require a 15 amp circuit.