Kaga is F'ed up
Yep. She took up to 14 bomb hits, a combination of 500 and 1,000 pound bombs.
And then her hundreds of tons of aircraft munitions started going off. Some accounts state that there was as much as 40 tons of bombs and torpedoes scattered around the hangar deck, courtesy of the multiple switches that were made between trying to decide whether to arm the planes for another attack on Midway or to deal with the American ships.
When those munitions started going off they did immense damage to the flight deck and apparently knocked out huge sections of the sides of the ship.
She was, by far, the hardest hit of all of the Japanese carriers at Midway. In a lot of ways it's a freaking miracle that there's much left at all.